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2018年, 第43卷, 第4期 
刊出日期:2018-10-24
  

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    Original Paper
  • Bingyan Li, Qiao Gao, Lijun Cao, Ary Anthony Hoffmann, Qiong Yang, Jiaying Zhu, Shujun Wei
    动物分类学报. 2018, 43(4): 341-355. https://doi.org/10.11865/zs.201832
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    Double-digested Restriction Site Associated DNA Sequencing (ddRAD) through next-generation sequencing (NGS) generates large numbers of loci for characterizing genome-wide variation among multiple samples using next-generation sequencing. Different combinations of restriction endonucleases (REs) may produce varying size distributions of digested fragments, which affect the number of genotyped loci. Understanding digestion profiles across different species will help in selecting REs for digestion in a particular organism. In this study, we use of genome sequences to compare the in silico digestion profile of 26 combinations of REs in 131 insect species with two simulation programs. The number of digested fragments in the 300–450 bp range increases linearly with the size of the genome. Different species and insect orders showed similar profiles when digested by different combinations of REs in silico, indicating the conservation of digestion by double enzymes in insect genomes. Combinations with NlaIII or TaqαI usually produced higher number of fragments in the range 300–450 bp, while combinations with EcoRI or MluCI produced fewer fragments. The proportion of fragments with the same overhangs at the two ends of digested DNA was higher than those with different overhangs. The two four-base enzyme pairs produced more fragments in the 300–450 bp range than pairs of four-base + six-base enzymes. Experimental digestion of three species from Hymenoptera, Lepidoptera and Thysanoptera showed profiles congruent with in silico expectations. Our results shed light on understanding the digestion profiles of insect genomes and provide guidance on selecting REs for ddRAD projects.
  • Xiaoya Sun, Yanhui Wang, Pingping Chen, Hesheng Wang, Lixiang Lu, Zhen Ye, Yanzhuo Wu, Teng Li, Wenjun Bu, Qiang Xie
    动物分类学报. 2018, 43(4): 356-386. https://doi.org/10.11865/zs.201833
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    Few studies have explored the differences between Sanger and HTS methods in the results of mitogenome sequencing. We used a single individual of insect to study the differences between the sequences given by Sanger and PCR-free HTS methods. Here we provided evidence for biased results of sequencing due to different methods in the mitochondrial genes of atp6, atp8, cox1, cox2, cox3, Cytb, nad2, nad3, nad4, nad5, rrnS, rrnL, trnH, trnI, and control region at various degrees. Especially, in cox1, the differently sequenced nucleotides account for 2.6% of the complete length. Furthermore, the highest value of the intraspecific genetic distance based on K2P accounts for 2.5% using a barcode fragment size of cox1 (651 bp, Sanger), while the maximum distance of the corresponding cox1 fragment obtained by the two sequencing methods was 5.0%. We revealed that the methods of Sanger and HTS may give different sequencing results of mitochondrial genes, which may reflect the heteroplasmy of mitogenomes within an insect individual. Therefore, researchers should be very cautious in using the mixed data of a gene given by different methods of sequencing.
  • Lan Nie, Yunliang Wang, Dunyuan Huang, Ruisong Tao, Chengyong Su, Jiasheng Hao , Chaodong Zhu
    动物分类学报. 2018, 43(4): 387-409. https://doi.org/10.11865/zs.201834
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    In this study, the complete mitochondrial genomes of four pierid butterfly species, namely Batltia butleri, Talbotia naganum, Pontia callidice and P. daplidice, were newly sequenced and characterized. Meanwhile the phylogenetic relationships of the main Pieridae lineages covering 22 pierid butterfly species, were reconstructed with Bayesian inference and maximum likelihood methods based on different mitogenomic datasets, including the concatenated 13 PCGs, 13 PCGs + 2 rRNAs, 2 rRNAs, 2rRNAs + 22 tRNAs and 22 tRNAs sequences, respectively. Our results of mitogenomic analysis showed that the four mitogenomes were 15,124, 15,155, 15,109, 15,124 bp in size, with the gene orders and arangements identical to all other butterflies determined. Our results of phylogenetic analyses upon protein coding genes, rRNA genes or their sequence combinations indicated that the three pierid subfamilies of this study were all monophyletic, with their relationships of being (Dismorphiinae, (Pierinae, Coliadinae)); the phylogenetic relationship of Pierini of this study was (Pieris, (Baltia, (Talbotia, Pontia))) + (Prioneris, (Delias, Aporia)). Additionally, our analyses suggested that only mitogenomic tRNA sequence datasets were not ready to be utilized in resolving the deeper phylogeny, whereas somewhat suitable to be applied in clarifying the phylogenies of closely related species, of the pierid butterflies.
  • Yisheng Zhao, Fan Song, Hu Li, Wanzhi Cai
    动物分类学报. 2018, 43(4): 410-419. https://doi.org/10.11865/zs.201835
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    The biological charchtiristics of the assassin bug Isyndus reticulatus St?l, 1868 (Hemiptera: Heteroptera: Reduviidae: Harpactorinae), especially its life history are provided in detail. And the assassin bug is redescribed here.
  • Kaijian Teng, Shuxia Wang
    动物分类学报. 2018, 43(4): 420-428. https://doi.org/10.11865/zs.201836
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    The genus Tecmerium Walsingham, 1907 is recorded for the first time in China. Two species are described as new: T. rectimarginatum sp. nov. from Hebei, Tianjin, Yunnan and T. yunnanense sp. nov. from Yunnan; and two species are newly recorded from China: T. scythrella (Sinev, 1986) and T. malikuli (Adamski, 2002). Photographs of adults and genitalia are provided, and a key to the Chinese species is given.
  • Manchao Xie
    动物分类学报. 2018, 43(4): 429-436. https://doi.org/10.11865/zs.201837
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    Three new species of eriophyoid mites from Wanglang Nature Reserve, Sichuan Province, China are described and illustrated, namely Aculops loniceris sp. nov. infesting Lonicera sp. (Caprifoliaceae), Aculus hypoleus sp. nov. infesting Maddenia hypoleuca Koehne (Rosaceae), and Anthocoptes lindleyanius sp. nov. infesting Buddleja lindleyana Fortune and Buddleja davidii Franch. (Scrophulariaceae). All new species described here are vagrants on the undersurfaces of leaves of their host plants.
  • 论文
  • 动物分类学报. 2018, 43(4): 437-440.
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  • 动物分类学报. 2018, 43(4): 441.
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