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2023年, 第48卷, 第2期 
刊出日期:2023-04-24
  

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  • Shiyu Du, Yinhuan Ding, Hu Li, Aibing Zhang, Arong Luo, Chaodong Zhu, Feng Zhang
    Zoological Systematics. 2023, 48(2): 107-116. https://doi.org/10.11865/zs.2023201
    摘要 ( ) PDF全文 ( )   可视化   收藏
    Phylogenomics is a new field that infers evolutionary relationships of taxa at the genome-scale level. The increment of molecular data may raise the potential bias as the limiting factor in phylogenomics. It is particularly important to explore these factors in phylogenomic analyses by simple, convenient, time-saving and (relatively) robust means. Here, we construct a set of custom scripts for USCO (universal single-copy orthologs) loci extraction, multiple sequence alignment, trimming poorly aligned regions, loci filtering and creating a concatenation matrix, prior to reconstructing the phylogenetic trees, to simplify analytical pipelines and improve the accuracy of tree estimation. These scripts employed a series of computationally efficient bioinformatic tools, and were used with a universal ‘BASH’ shell or visual interface by Windows-like ‘drag and drop’ operations in LINUX systems. Most steps in these scripts are parallelized to accelerate analyses. These new custom scripts provide a convenient analytical solution for phylogenomics data preparation, data quality control, and detection of potential analytical errors. Details and scripts usage are provided at https://github.com/xtmtd/ Phylogenomics/tree/main/scripts. The virtual mirror file (.vmdk) integrates the operating system and required environment. All tools and scripts can be downloaded from https://dx.doi.org/ 10.6084/m9.figshare.21283026. Besides, the video introduction and “walk-through” for each script are provided at https://space.bilibili.com/319699648/channel/seriesdetail?sid=2682055.
  • Communication
  • Hecai Zhang, Junhua He, Changying Shi, Guangwen Chen, Dezeng Liu
    动物分类学报. 2023, 48(2): 117-125. https://doi.org/10.11865/zs.2023202
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    Planarian is an excellent model for studying several scientific issues, and planarianology has become an active research field in the world. Researchers at home and abroad have conducted a lot of in-depth studies on planarians in various areas. This paper outlined the panorama of planarian research in China and summarized the advances from three aspects of taxonomy, molecular phylogeny and phylogeography, regeneration, tissue homeostasis and immunity as well as toxicology. Furthermore, the current problems and future development direction and tendency of planarian research in China are briefly analyzed and prospected. Importantly, the catalogue of planarians in China is also presented.
  • 研究论文
  • Xiaolei Huang, Samiran Chakrabarti, Junjie Li, Bradford A. Hawkins, Gexia Qiao
    Zoological Systematics. 2023, 48(2): 126-139. https://doi.org/10.11865/zs.2023203
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    The history of the Qinghai-Tibetan Plateau and the Himalayas (QTPH) region makes it a ‘living laboratory’ for understanding how the Earth’s abiotic evolution has shaped regional biotas. However, no studies to date have attempted to investigate general macro-scale biogeographical patterns and biogeographical affinities of the QTPH terrestrial fauna in a global context. Based on the analyses of the global distributions of QTPH Aphidomorpha species, we examined generalized distribution patterns for them and investigated the biogeographical affinities between the QTPH and other regions. Track analysis and cluster analysis of the global distributions of 298 Aphidomorpha species in the QTPH identified seven generalized biogeographical tracks and eight general distribution patterns. Both approaches detected similarly generalized distribution patterns. Four marginal areas where the generalized tracks intersect, i.e. the eastern Himalayas, the western Himalayas, the Hengduan Mountains, and the northeastern QTPH, were identified as biogeographical nodes. The generalized distribution patterns indicate the biogeographical affinities between the QTPH and other regions and suggest the complex nature of the QTPH fauna. A spatial congruence between the nodes and diversity centres detected by previous studies indicates the four marginal areas have been key areas in fauna evolution as centres for faunal exchange as well as glacial refugia. Based on the biogeographical patterns, the geological history of the QTPH and the evolutionary history of Aphidomorpha, we propose an evolutionary scenario for the evolution of the QTPH aphid fauna in which faunal exchanges, vicariance due to the uplift of geographical barriers, environmental heterogeneity and Quarternary glaciations have shaped the diversity patterns and fauna in the QTPH.
  • Xin Yu, Adolfo Cordero-Rivera
    Zoological Systematics. 2023, 48(2): 140-146. https://doi.org/10.11865/zs.2023204
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    Males of Platycnemis latipes (Platycnemididae, Odonata) have enlarged tibiae (fans) and patrol using a special longitudinal zig-zag flight. By means of focal observations and experimental manipulations of the colour of abdomen and fans of mature males, we suggest that the zig-zag flight is used to avoid unnecessary harassment from other males and has not the function to attract females. The fans of P. latipes are mainly used as a tool to threaten rivals, but their effectiveness seems limited. Both abdomen and fans of a mature male can reflect UV light strongly.
  • Wenjie Huang, Xiang Xie, Antai Wang, Yu Zhang
    动物分类学报. 2023, 48(2): 147-158. https://doi.org/10.11865/zs.2023205
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    In this study, two new species of Typhloplanidae, viz Phaenocora shenda Huang & Wang, sp. nov. and Mesostoma jilinensis Wang & Huang, sp. nov. collected from northeastern and southern China, were identified and described through an integrative approach combining morphological, histological, and molecular (18S and 28S rDNA) data. Phaenocora shenda Huang & Wang, sp. nov. is morphologically characterized by the presence of an unarmed penis papilla, a genito-bursal duct and a burso-intestinal duct. The individual of P. shenda Huang & Wang, sp. nov. can be in green color or colorless, depending on whether it contains the endosymbiotic zoochlorellae or not. Mesostoma jilinensis Wang & Huang, sp. nov. is morphologically characterized by a relatively large penis papilla of the copulatory organ. A prepharyngeal pit is present. The paired uteri are connected to the common genital atrium. Phylogenetic analyses inferred from nuclear 18S and 28S rRNA genes have provided insights into the phylogenetic position of these two new species.
  • Qingjie Zhou, Zeyi Cao, Zhipeng Gao, Bingwen Xi, Kai Liu
    Zoological Systematics. 2023, 48(2): 159-168. https://doi.org/10.11865/zs.2023206
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    Myxozoans are common microscopic endoparasites in fish, and some are highly pathogenic to their wild and farmed fish hosts. In the present study, myxosporeans infection in the kidney of silver carp Hypophthalmichthys molitrix (Valenciennes, 1844) from Lake Taihu, was investigated, and two dominate species, Myxobolus lieni (Nie & Li, 1973) and M. varius (Achmerov, 1960), with infection prevalence 60.2% and 35.2%, respectively, were well characterized based on morphological, histopathological and DNA sequence data. M. lieni formed small roundish plasmodia in the epithelial cells of renal tubules. The mature myxospores appeared suborbicular, slightly flat in frontal view and fusiform shaped in sutural view. Dispersed myxospores of M. varius were found in the renal interstitium without forming plasmodia structures and enclosed within melano-macrophage centers. The spore appeared elliptical in frontal view, with wider anterior than posterior and shuttle shaped in sutural view. Interestingly, the occurrence of myxozoans in the kidney detected with SSU rDNA PCR and clone sequencing, revealed co-infection of five Myxobolus species. BLASTn search indicated SSU rDNA gene sequences obtained here were not identical to any sequence available in GenBank. Phylogenetic analyses showed that the five Myxobolus species detected here were clustered together, forming a separate clade of cyprinid-infecting myxozoans.
  • Min Ma, Yu Liu, Yujing Li, Xiaotong Fu, Qinghai Fan, Ruixia Men
    Zoological Systematics. 2023, 48(2): 169-176. https://doi.org/10.11865/zs.2022412
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    The genus Neoseiulus Hughes, 1948 is one of the largest genera in Phytoseiidae and contains more than 364 valid species in the world. In this paper, a new species N. setarius Ma, Meng & Fan, sp. nov. is described based on both adult female and male specimens collected from Setaria viridis (L.) Beauv. (Gramineae), in Inner Mongolia of China. The adult females of the new species are characterized by having a fully reticulated dorsal shield, barbed Z5, bell-shaped spermathecal calyx with a short basal stalk. Furthermore, seta R1 is off dorsal idiosomal shield in adult males.
  • Li Shi, Donghui Wang, Ding Yang
    Zoological Systematics. 2023, 48(2): 177-183. https://doi.org/10.11865/zs.2023208
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    Species of the genus Steganopsis from China are revised, including a new species, namely S. mayanghensis Shi & Yang, sp. nov., and a new recorded species, S. multilineata de Meijere, 1924. A key to species of the genus Steganopsis from China is presented.
  • Shidie Liu, Chuntian Zhang, Xinqiang Xi
    Zoological Systematics. 2023, 48(2): 184-190. https://doi.org/10.11865/zs.2023209
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    Two new species of the tribe Eryciini of subfamily (Diptera: Tachinidae: Exoristinae) from the eastern part of Qinghai-Tibetan Plateau, China are recognized, described and illustrated: Drino latifrons sp. nov. from NE Sichuan and Lydella gannanensis sp. nov. from S. Gansu, China. All the type specimens studied are deposited in Insect Collection, Shenyang Normal University.